species:   Rhsol
pid:       PID0604
parent:    Rhi-milR-7
paralog:   
locus:     KB318401.1:54-126
matures:   ['AAUCCUGUAUGAGACUCUGUGC', 'AAGACACACAUCCAGGACAUGU']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB318401.1:54-126

0 out of bounds
18 alignments
12 proper strand
11 stranded perfect matches

          *************************   *************************          
UUUGUUGGGAGCAAGACACACAUCCAGGACAUGUUUGAUGCAAUCCUGUAUGAGACUCUGUGCUCUAUGCCAG
.......(((((((((..(.(((.(((((..(((.....))).))))).))).)..))).)))))).......
-----------------------------------------AAUCCUGUAUGAGACUCUGUGC---------- l=22 a=1 c
------------AAGACACACAUCCAGGACAUGU--------------------------------------- l=22 a=0 c*
----------------------------------------CAAUCCUGUAUGAGACUCUGUGC---------- l=23 a=3 ma
------------AAGACACACAUCCAGGACAUGUU-------------------------------------- l=23 a=0 ma*

-------------------------------------------UCCUGUAUGAGACUCUGUGCUC-------- l=22 a=2 
-------------------------------------------UCCUGUAUGAGACUCUGUGCUCU------- l=23 a=1 
-----------------------------------------AAUCCUGUAUGAGACUCUGUGC---------- l=22 a=1 (c)
----------------------------------------CgAUCCUGUAUGAGACUCUGUGC---------- l=23 a=1 
----------------------------------------CAAUCCUGUAUGAGACUCUGUGC---------- l=23 a=3 (ma)
--------------------------------------UGCAAUCCUGUAUGAGACUCUGUGC---------- l=25 a=1 
-----------------------------------UGAUGCAAUCCUGUAUGAGACUCUGUG----------- l=27 a=1 
---------AGCAAGACACACAUCCAGGACAUG---------------------------------------- l=24 a=2 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-001
